Download gct file

Within the Gecko Code Manager you can create and add codes. From there you can save them to at text file. By doing it within the application itself it will format the codes in the text file on it's own. However it's generally easier to just create the text file and edit it with a text editor.

The Code Manager reads plain text. Each of the following parts needs be separated by a blank line. It is organized as follows:. The first line contains the version string and is always the same for this file format. Therefore, the first line must be as follows:.

The second line contains numbers indicating the size of the data table that is contained in the remainder of the file. Note that the name and description columns are not included in the number of data columns. The third line contains a list of identifiers for the samples associated with each of the columns in the remainder of the file. Line format: Name tab Description tab sample 1 name tab sample 2 name tab The remainder of the data file contains data for each of the genes.

There is one row for each gene and one column for each of the samples. The number of rows and columns should agree with the number of rows and columns specified on line 2. Each row contains a name, a description, and an intensity value for each sample.

Names and descriptions can contain spaces, but may not be empty. Intensity values may be missing. To specify a missing intensity value, leave the field empty Line format: gene name tab gene description tab col 1 data tab col 2 data tab The RES file format is a tab delimited file format that describes an expression dataset.

It is organized as follows. The first line contains a list of labels identifying the samples associated with each of the columns in the remainder of the file. Line format: Description tab Accession tab sample 1 name tab tab sample 2 name tab tab The second line contains a list of sample descriptions.

Currently, GSEA ignores these descriptions. Our RES file creation tool places the sample data file name and scale factors in this row, as shown below. Line format: tab sample 1 description tab tab sample 2 description tab tab The third line contains a number indicating the number of rows in the data table that is contained in the remainder of the file.

Line format: of data rows. For example: There is one row for each gene and two columns for each of the samples. The first two fields in the row contain the description and name for each of the genes names and descriptions can contain spaces since fields are separated by tabs. The description field is optional but the tab following it is not. The PCL file format is a tab delimited file format that describes an expression dataset.

For more information, see Stanford pcl file format. The TXT format is a tab delimited file format that describes an expression dataset. The first line contains the labels Name and Description followed by the identifiers for each sample in the dataset.

NOTE: The Description column is intended to be optional, but there is currently a bug such that it is treated as required. We hope to fix this in a future release. Joined Jan 17, Messages Chibo, I love you LOL. Joined Mar 27, Messages 2, Location oakland. This looks great, I'll check it out for sure. Good job, Chibo! So this program can completely replace codemgr?

Not yet, perhaps it will eventually, but Code Manager works a little bit better on the txt side of things, which I hope this will eventually do. At the moment when you open a TXT file in this it literally just rips out all of the code lines then reads it as a GCT, so if you open a TXT then save it as a TXT, you're going to get a bunch of unknown codes since it doesn't pay attention to the titles when importing TXTs.

Originally I wasn't even going to have support for adding TXTs, but Illianex suggested I should add it, so I did as a last minute thing. In my next main revision I'm going to enhance the TXT side of things, so eventually this can serve as a replacement to Code Manager.

I'm also going to support direct editing and removal of codes, since at the moment this can only add and if you want to edit or remove you have to save it as a TXT, edit, then re-open. Yeah when it replaces code manager that'll be sick. Joined Feb 15, Messages 3, People still use Code Manager?

Cheat Manager is so much easier and faster to use. Might as well bump this just so ppl know it exists lol. Stevo Smash Champion. Joined Mar 31, Messages 2, Location km north of nowhere, Canada. I guess I shoulda read the readme more closely. SymphonicSage12 Smash Master. Joined Feb 6, Messages 3, This looks like it could be amazing Chibo, I've been looking for something like this. But I ran into a problem with it.

When trying to open my GCT, it stopped after 1 code 4. Would you have any idea how to fix this? ChiboSempai said:. Like, It's just a folder with a bunch of random files in it. Like, where IS the program inside the folders? Just double click the jar file and it opens the program lol. Download the latest java. And it doesn't exactly "reach" a number, it doesnt like count up as it goes lol.

It loads the whole file, then calculates the percent. I opened the gctedit. INF folder.